Protein Info for QEN71_RS41790 in Paraburkholderia sabiae LMG 24235

Annotation: PDDEXK nuclease domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF17761: DUF1016_N" amino acids 17 to 192 (176 residues), 135.5 bits, see alignment E=1.4e-43 PF06250: YhcG_C" amino acids 219 to 364 (146 residues), 184.2 bits, see alignment E=1.5e-58

Best Hits

KEGG orthology group: None (inferred from 68% identity to app:CAP2UW1_3124)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>QEN71_RS41790 PDDEXK nuclease domain-containing protein (Paraburkholderia sabiae LMG 24235)
MTKVPIGSGDYAGLHKEVVSVVESARSAAARNVNAVMTAAYWEIGRRIVASEQGGQARAG
YGQALIARLADDLTHRFGRGFGKANLASMRAFYLAWPEKEIFQTVSGKSAATGIVQTLSG
KSRAAKDEVDATATAPEYMTLATRFTLPWSAYVRLLSVKTSAARTFYETEALREGWSVRQ
LDRQVSSQLYERLALSRNKAALLKKAAAVHPGDLLTPEEAIRDPFVLEFLDLKDEYSESD
LEAALIQRLTDFLLELGDDFAFVGRQRRLRIDDTWFRVDLVFFHRRLRCLMIIDLKVGKF
SYADAGQMHLYLNYAREHWVKPGENPPVGLILCAQKGSAEARYALDNLPNKILAAEYQTV
LPDETLIVAELERTRAELEQRRSSAGAGTASTGA