Protein Info for QEN71_RS41450 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 387 (366 residues), 172.8 bits, see alignment E=4.9e-55

Best Hits

Swiss-Prot: 40% identical to RHMT_ECOLI: Inner membrane transport protein RhmT (rhmT) from Escherichia coli (strain K12)

KEGG orthology group: K13021, MFS transporter, ACS family, tartrate transporter (inferred from 61% identity to tsa:AciPR4_2806)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>QEN71_RS41450 MFS transporter (Paraburkholderia sabiae LMG 24235)
MKPEIHTRTMGKVSRRLIPFMIIMFLINFLDRVNIGFAALEMNKDLGLSPSTYGFAAGIL
FIGYVAFEVPSNMILQRVGARVWLARIMITWGILATLMAFVFNEASLFTLRALIGVAEAG
FFPGLVFYMMRWFPAEERAKAITVFMLGNPISVIIGGPLSTAILHFAHHFGGFAGWQWLF
IIEGIPAIIIGAVTLVWLTERPEDAKWLEPDEREWLVTKISEEARAKESRGHSPVRVRDI
FVHGKTLAFAFSKFCVLLAFFGITLWLPQIVKSIGTLNTFEVGVASAIPYVFSAIASVLI
GRHSDKTGERKWHIALPAFLGAAGFVVASLTANPWGAMAALCVAATGLWVSNTVFWTLPS
AMLSGTTAAAGIAFINAFGNLGGFVGPYLTGWIREATHSYVWALAMLGGFLALSGIIVLI
VGRSEAPGSGRAERVAQQPAFRKS