Protein Info for QEN71_RS41375 in Paraburkholderia sabiae LMG 24235

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 40 to 61 (22 residues), see Phobius details amino acids 82 to 109 (28 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 341 to 360 (20 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details amino acids 400 to 421 (22 residues), see Phobius details amino acids 427 to 444 (18 residues), see Phobius details amino acids 458 to 478 (21 residues), see Phobius details amino acids 490 to 508 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 10 to 429 (420 residues), 161.8 bits, see alignment E=2.6e-51 PF00324: AA_permease" amino acids 15 to 465 (451 residues), 114.6 bits, see alignment E=5e-37

Best Hits

Swiss-Prot: 60% identical to YBEC_BACSU: Probable amino acid-proton symporter YbeC (ybeC) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 73% identity to bpy:Bphyt_3527)

Predicted SEED Role

"Amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>QEN71_RS41375 APC family permease (Paraburkholderia sabiae LMG 24235)
MKDNVNRTISPVALLFTGLGSIIGSGWLFGAWHASKIAGPAAIIAWIIGAVVVLAIALTY
AELGTTFPESGGMVRYARYSHGALVGFIAAWANWISIVSVIPIEAIASVQYMASWPYPWA
HALMSGEDLTANGLSVSALLVIVYFMLNYWGVKLFVKTNTAITVFKFLVPGATILSLMWA
GFHQENFALGTVGEFAPYGLSSILTAVATSGIVFSFNGFQSPVSLAGEARNPSKSIPFAL
IGSILLALVIYVMLQIAFIGAVTPSSIASGWHGLNFSSPFAELAITLNLNWLAILLYVDA
FVSPSGTGTIYTATTARMVYAMERNRTMPGVFGTIHPIYGVPRAAMWFNLGISFVFMFFF
RGWGTLAAVISVATVISFLTGPVSLMALRKHAPELPRPLRIRGMSAIAPFAFVCASLVLY
WACWPLTGQIILLIIVALPVYFYYQAKAGWENFGTELRAAWWVLFYLPAMAMLSLLGGRE
FGGMGLIPDGWDLLTVVAVSLAFYRWGVRSAQRTEYLKEHACAEMLEIDAQDALTPATTQ
WRVG