Protein Info for QEN71_RS41305 in Paraburkholderia sabiae LMG 24235

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details PF01266: DAO" amino acids 21 to 411 (391 residues), 175.8 bits, see alignment E=4.8e-55

Best Hits

KEGG orthology group: K00285, D-amino-acid dehydrogenase [EC: 1.4.99.1] (inferred from 68% identity to bac:BamMC406_3227)

Predicted SEED Role

"D-amino acid dehydrogenase small subunit (EC 1.4.99.1)" in subsystem Pyruvate Alanine Serine Interconversions or Respiratory dehydrogenases 1 (EC 1.4.99.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.99.1

Use Curated BLAST to search for 1.4.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>QEN71_RS41305 FAD-dependent oxidoreductase (Paraburkholderia sabiae LMG 24235)
MSVATDSLLARTTDSRPTGTIAVIGGGIVGVCCALYLQQSGYAVTLIDPAKPGDSTGKWS
CGQLAVGEVVPLSKPGILKKIPGWLMDQEGPLALRPLSFPRMLPWMMRFLSCARQSRLVE
IAHDLASLTGRVFDDYGPLLNGCSDKALLSQRPVMQVFDTAGGLEQDLHHAELPRSLGFA
FEKLGAADIADLEPALAGKFKHGILLSDWRFVSDTQGFIVALTESFTARGGRRLLAGASR
INEDNGRATGVELSNGESVAADYVVVAAGVGSRKFFTHLGVNIPLEGVAGYQVLLTDPGI
ALRHSVIYADGGFCLAPMTRGLQVGGTIEFAQRDAAPNFERATIILNKTKRIFPELRTQE
QQLGVGYRPLLPDTKPVIDRTRKLKNVVLATGHGQLGLTLAATTGRLVTDLISGSKPPVD
LAPFGAYRF