Protein Info for QEN71_RS39480 in Paraburkholderia sabiae LMG 24235

Annotation: PAS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 888 PF00989: PAS" amino acids 8 to 101 (94 residues), 32.6 bits, see alignment E=3.2e-11 amino acids 254 to 364 (111 residues), 35.2 bits, see alignment E=5.1e-12 TIGR00229: PAS domain S-box protein" amino acids 11 to 111 (101 residues), 28.1 bits, see alignment E=9.3e-11 amino acids 251 to 373 (123 residues), 54.9 bits, see alignment E=4.8e-19 amino acids 424 to 496 (73 residues), 27.5 bits, see alignment E=1.5e-10 PF08448: PAS_4" amino acids 11 to 110 (100 residues), 37.5 bits, see alignment E=1.1e-12 amino acids 268 to 369 (102 residues), 30.1 bits, see alignment E=2.2e-10 amino acids 424 to 492 (69 residues), 23.5 bits, see alignment 2.5e-08 PF13426: PAS_9" amino acids 15 to 111 (97 residues), 33.2 bits, see alignment E=2.5e-11 amino acids 277 to 366 (90 residues), 24.9 bits, see alignment E=9e-09 PF08447: PAS_3" amino acids 23 to 107 (85 residues), 36.5 bits, see alignment E=2.2e-12 amino acids 279 to 360 (82 residues), 57.6 bits, see alignment E=5.8e-19 amino acids 414 to 482 (69 residues), 28.9 bits, see alignment 5.3e-10 PF00512: HisKA" amino acids 504 to 569 (66 residues), 56.8 bits, see alignment 8.2e-19 PF02518: HATPase_c" amino acids 615 to 726 (112 residues), 95 bits, see alignment E=1.8e-30 PF00072: Response_reg" amino acids 753 to 861 (109 residues), 71.7 bits, see alignment E=2.6e-23

Best Hits

KEGG orthology group: None (inferred from 87% identity to bph:Bphy_5239)

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (888 amino acids)

>QEN71_RS39480 PAS domain-containing protein (Paraburkholderia sabiae LMG 24235)
MYDPAHFLPSFVWRADRDGLVRYVNPWASRYLGIPAEQIIGRTWRDFVHPDDINSVLDAV
RTMGDGSLLRNVDVRLLRGDRVFHWHTLHLQAQRDESGRIGDTVGVATDIHHCRHAWAMY
EASERRLKAAFHGARMGAWEWDMKNREVRMTEQLAELYSFPPGTEAVALSDLWNRVAPEY
REPFQQKVERALQCGGPFEFDFVLDNDTHPARWLRMRGHAEFDGQGELARVHGVTFDISR
QRAAEDSLILSERRYRALVESTGALVWSAHPDGEIRPADEPWGKFTGANPVRLENWGWLD
FVHPDDREVAREAWLDVLQKGTAGSITFRMRRYDGRYRMVQAHAAPLYDEHGTLQEWFGT
TTDVTAQHEAQAAIEARSLRLNVAMQAAEIHIVALDVASWTLSFEVAGEPQERETLAYEA
ALSRVHPDDRPVLDRYVRELAAGGDPGAHFEFRVQSPGGEQWMEGSALLQRAADGKPLRL
IASVVDITDRKRMELMLRETDRRKDEFLAMLAHELRNPLAPIRTAIALFEKQDGIDQRSA
GLIKLMRRQTEHMTRIVDDLLEVSRITQGRIALQLEPLLVGTAVYHAVEAMAASVEARGQ
HMHVDVSDATAWVRGDATRISQILVNILNNASKYTPEKGNISISARADEQSVEIVTTDTG
TGISAELLPKVFELFSQGERTLDRSSGGLGIGLSLVKKLVELHDGTITVQSEGEGRGTTV
TVRLPRLHHHERHSAQVLSEPAASAKSTALRLLIVDDNRDAADSLAMLCELEGHSTRTAY
SSVEAIEAAAQLRPDAALLDIGLPDIDGYELARRLRPKDETLPFLIAITGYGQAEDRLRA
QSAGFDYHFVKPVNAEGLLKLLSSLTAQEPGSRTGDVAPQAADPDAMT