Protein Info for QEN71_RS38710 in Paraburkholderia sabiae LMG 24235

Annotation: high frequency lysogenization protein HflD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 101 to 120 (20 residues), see Phobius details amino acids 142 to 167 (26 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 261 to 285 (25 residues), see Phobius details amino acids 292 to 317 (26 residues), see Phobius details amino acids 338 to 362 (25 residues), see Phobius details PF03824: NicO" amino acids 105 to 204 (100 residues), 54.1 bits, see alignment E=7.7e-19

Best Hits

KEGG orthology group: None (inferred from 62% identity to bgl:bglu_2g15650)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (368 amino acids)

>QEN71_RS38710 high frequency lysogenization protein HflD (Paraburkholderia sabiae LMG 24235)
MLMLERHLLRVLLALCVAVACITSIASAHAATPVVDVFGRPVQASSASAVSSPQPAKEAT
QQVILPEFIRTILATSIIWQGKLNARIADAAQQLHRSSAPWTWFTLIALSFAYGVLHAIG
PGHGKFVAGTYLGSRDSRIVQAISLATWSAAVQAMSAIVLVFGAVWFAKEGASSVLSNAA
SLDIASYTLLCVAGGWTIYTTLTRRDCCADPRALKLVPDERAAQSSQVSQNEPSYFGTRL
QFHTRQSAIATRPGSSTISQILATGFASGIRPCVGSIFVLIASVAAHAPWVGIAATFAIG
AGVALTVTLFGLGAVGANRFIMTRGFRLRSKIKATQRVVAIAGALLIVLFGATQTALILT
GYLQPSLT