Protein Info for QEN71_RS38355 in Paraburkholderia sabiae LMG 24235

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 30 to 51 (22 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details PF16927: HisKA_7TM" amino acids 9 to 217 (209 residues), 45.6 bits, see alignment E=8e-16 PF02518: HATPase_c" amino acids 356 to 459 (104 residues), 77.4 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_5606)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>QEN71_RS38355 sensor histidine kinase (Paraburkholderia sabiae LMG 24235)
MYSTLPAFVSALFLGFGVYVLLTEGVTRLSAPFALMCMTTFAWQGTWAFLFQSTSPEAAG
VLVKAGYFFILFLPTTFYHFVIELTERRDERPLLMASYALCVILAVLLVTSDEVVAGFGS
HFFGDYPKAGRLHPVHVLQTVMLAGRSGWLLIVSRRQARARHRRRLLGLCLVSLCLYSVA
AGDYAVNYGYVFYPPGVIFIAISLGILAVTIVRHGLMRQYFLAATVAQEVAMPLEVIGMH
ADELGNALPELLRGYQLAVRHQLLVNGLYPGQSERLPTLTRAIRRQIDSTSTVVEMSLAS
FTLDRLDRRSFGPQSIRHCVDSALDRYPFQPGERGRVSVIPIDPQLRFSGTDSLFVFVLF
NLLKNALYAIEASGLGNITISAGRDGGFCVIHFNDTGPGIAPDILPHIFDPFYSTKPPGQ
GGGMGLEFCRRVCDAFGGTISCASTPGVLTTFTLRLPEPGSMADRAAHDPPVKARRSRAG
QREIN