Protein Info for QEN71_RS37035 in Paraburkholderia sabiae LMG 24235

Annotation: ankyrin repeat domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF12796: Ank_2" amino acids 37 to 128 (92 residues), 53 bits, see alignment E=1.1e-17 amino acids 137 to 217 (81 residues), 48.5 bits, see alignment E=2.6e-16 PF13606: Ank_3" amino acids 65 to 92 (28 residues), 19.7 bits, see alignment (E = 2.1e-07) amino acids 165 to 189 (25 residues), 17.4 bits, see alignment (E = 1.3e-06) PF00023: Ank" amino acids 65 to 94 (30 residues), 24 bits, see alignment 8.8e-09 amino acids 98 to 129 (32 residues), 24 bits, see alignment 8.8e-09 amino acids 131 to 160 (30 residues), 17.3 bits, see alignment 1.2e-06 amino acids 164 to 195 (32 residues), 24.7 bits, see alignment 5.3e-09 PF13637: Ank_4" amino acids 67 to 109 (43 residues), 25.5 bits, see alignment 3.2e-09 amino acids 100 to 150 (51 residues), 25.8 bits, see alignment E=2.7e-09 amino acids 133 to 184 (52 residues), 27.6 bits, see alignment E=7.3e-10 PF13857: Ank_5" amino acids 84 to 138 (55 residues), 30.8 bits, see alignment E=7.5e-11 amino acids 150 to 204 (55 residues), 35.8 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: None (inferred from 76% identity to bge:BC1002_5556)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>QEN71_RS37035 ankyrin repeat domain-containing protein (Paraburkholderia sabiae LMG 24235)
MKDPVRYVATALLTACALGAALPAMAQDAGEINRTLLAAAKDDDRASVIAALDHGAAIDA
MTRIGDTPLLTACKKGDAEMARTLIERGANVKHANASGVTPVMAAAYGGYDAIVTLLLAR
GADPLATDRVGKTAMEYAAGQGQTQVVKQLLDTGIDVNRRYKNDLTALMWAAGYDRADTV
KLLLARGADESLKDNRGMTAQDIAAQTQSNQVASLLSAHQPQ