Protein Info for QEN71_RS36510 in Paraburkholderia sabiae LMG 24235

Annotation: helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF01965: DJ-1_PfpI" amino acids 61 to 193 (133 residues), 52.7 bits, see alignment E=7e-18 PF12833: HTH_18" amino acids 256 to 334 (79 residues), 80.4 bits, see alignment E=1.5e-26 PF00165: HTH_AraC" amino acids 298 to 334 (37 residues), 34.9 bits, see alignment 1.9e-12

Best Hits

KEGG orthology group: None (inferred from 61% identity to rhi:NGR_b23440)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>QEN71_RS36510 helix-turn-helix domain-containing protein (Paraburkholderia sabiae LMG 24235)
MRGDYSFLRPGKSAPEVEAPLRIGIAPTPDFTLMSLSCFVEFLRLSADEADFSRQIYCSW
DLLSHEMAPIRSSCGFPMLPTRLFGDPTAYDYVVVHGGLLHSAAPIPDELYRFVQSCVEA
RVPVIGLCTGQFILAELGYLAGKRCAVHFSLAHAMQSNFPDVIAVTDAPVVVDGGFITCP
GGLAAINLAMHLVTTSCGNTRSHKALHYLMADRGFEEIQAMKDDSEIGLHCPDRRVVNAV
GLMRQRTFEPGSIAGIAQAIGTTERELTRLFRKHLRVAPLQYWRGMRLNAAKWMVINSDR
SITQIAYECGFTDSSHLIHWFKREFNVTPSKLRRLQSDFGVH