Protein Info for QEN71_RS36010 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 59 to 84 (26 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 116 to 139 (24 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 369 to 394 (26 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 391 (363 residues), 164.8 bits, see alignment E=1.4e-52

Best Hits

Swiss-Prot: 46% identical to TUB4_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 56% identity to rso:RSc2352)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>QEN71_RS36010 MFS transporter (Paraburkholderia sabiae LMG 24235)
MSSHIPATYVESADTSAFTKATWRLLPFLFVCYLFAYLDRINVAFAKLQMLGDLGFSEAV
YGFGASVFFVGYLLFEVPSNLLLLRVGPRRWIARIMVTWGLISAAMMFVRTPTMFYVMRF
LLGVAEAGFFPAIVLYLTYWFPASRRSKVTALFLTGIPMSGVIGGPLSGWIMTAFNGSNG
FAGWQWLFLVEGVPTALLGIAAFFYLDDKVRDAKWLSEEQKDLIEEKLKEEAPASALHSL
KDGLLSPKVLLVSAIYFFYTMGLYGVSFWLPTLIKSSGVSDPFHVGLLTAVPYAAGALAM
VFVSHNSDRTGERRWHLIVPGLVGAFGLAMSVWFSGSTLAAMIALTIGTMGVMTTISQFW
VIPPAFLGGAAAAAGLALANSVGSISGVVSPSLIGVIKQASGSAGAGVLALAVSLVIGGL
LVLFVPPTLVNNRRR