Protein Info for QEN71_RS35770 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 22 to 42 (21 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 79 to 96 (18 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 305 to 322 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 316 (267 residues), 141.3 bits, see alignment E=1.8e-45

Best Hits

Swiss-Prot: 43% identical to RBSC_HAEIN: Ribose import permease protein RbsC (rbsC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 66% identity to mlo:mll1013)

MetaCyc: 45% identical to ribose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-28-RXN

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>QEN71_RS35770 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MTTTVQNQPTTPTHRRDFLAVLKSYGLVWVLLGLCAIATWLSPSFLGVMNLVNVLRQIAL
LGIVGIGMTFVILARGIDLSVGSIVGLIAVVTALMLTQGYPVYLCVLAAIALGLVLGAIN
GLGIAIGRLPAFIMTLGSMVMFRGMALSIANGQPINVGDAPGFDFIGSGDFLQIPVVVWL
FAAIALLAFLVLRYTSFGRYVYAVGSNTEAAHLAGINTRVISFIVYVISGLAAAITAIVY
VSRLTVGEPTAGTGLELEAIAVTVIGGTSLFGGEGGVMGTVLGAAIIAVLANVMNLLGIS
PFTQQIIKGAIIIVAVLFEMYRGKGKKA