Protein Info for QEN71_RS35060 in Paraburkholderia sabiae LMG 24235

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details PF00672: HAMP" amino acids 81 to 134 (54 residues), 42 bits, see alignment 1.5e-14 PF00512: HisKA" amino acids 142 to 194 (53 residues), 36.9 bits, see alignment 4.7e-13 PF02518: HATPase_c" amino acids 248 to 357 (110 residues), 81.8 bits, see alignment E=7.2e-27

Best Hits

KEGG orthology group: None (inferred from 60% identity to bgd:bgla_2g03640)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>QEN71_RS35060 ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MSRRARLSFQIVVSMGLVSVITMLIAFVIGLIFYGLYYTFWPQFTEPAVPENPYIPDPAD
YLFLLISVLFGLVVAVIVALRLAKRILVPLNSLAENARRIATGDLTARSVPGDRSLGETA
LLVDDFNAMAERLEGMTSEMTAWNAAIAHELRTPLTILRGRLQGLRDGVFAPSEALFAGL
LDQVEGLSRLVDDLHIVTLNDVGRLELHLEPTRIDVTVQQAVLSVENALRDAGFNIQVVT
VPLHLYCDAARIRQTLLALLDNARRYAVPGAVRVELSAHGRGFLLVVEDEGPGLNADFAR
HVFEPFSREDASRSRRLGGSGLGLSVVRAIARAHGGEARYRASSLGGSAFELEIPATLPG
PVV