Protein Info for QEN71_RS34355 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 382 to 405 (24 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 402 (366 residues), 171.8 bits, see alignment E=1e-54

Best Hits

KEGG orthology group: None (inferred from 54% identity to har:HEAR2120)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>QEN71_RS34355 MFS transporter (Paraburkholderia sabiae LMG 24235)
MYEKIQPLAGELDYASSDAEGDAKLYKKVALRLIPLLFICYVVAYLDRINVGFAKLQMQD
ALGFSDTVYGLGAGIFFIGYFLFEVPSNMILERIGAKRTIARIMICWGITGCLLAHVSTP
TGFYVLRFLLGAFEAGFFPGVVYYLGCWFPEARRGHMLGIFMTGIPIAGLFGGPVSGWAM
SSLSGFGMQGWQWLYVIEAAPAVLLGIVALAYLDDNARDAKWLTPGERDRLTLALVAESE
RNSSRTDASLRRAMTSVRLYALAFAYFAFICGTYAVSFWLPTVLKSSGVTDVAQIGWYSA
IPYGISAVGMVWLCRNSDRTMERRWHTSLAAIAGAVALALLPHVPANVSVTIVLLTVAAT
GIFATMPLFWSIATDYFAGTSSAAVAIALINSLGLVGGFASPFMMGWLKTVTGSLTTGLY
VVTAVLLLGAIILLIFAPRSTPSARS