Protein Info for QEN71_RS34335 in Paraburkholderia sabiae LMG 24235

Annotation: cytosine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details amino acids 277 to 298 (22 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 11 to 420 (410 residues), 171.7 bits, see alignment E=1.3e-54

Best Hits

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>QEN71_RS34335 cytosine permease (Paraburkholderia sabiae LMG 24235)
MDVEKRSIEFIPLGERYGTPKRLFTIWFSANMQVTALVIGTLGIVAGLDLFWTIVGLVLG
NVIGTIFMAAHSAQGPHLGIPQMIQSRAQFGVFGAAMPLGIVVLAYILFVAAGGVVMRDS
IKAIYPMSDNAAIVLFGVLTFIISYIGYELIHKMGAFMTLLSCVIFFASAGIVFSKPELL
ANVHHAKRGFSAGAFNLVVAQAASWTLGFGPYVADYSRYLPANVKTKATFWYTYLGGLLG
SLLVMMLGAFLAAAIPSITNDPGTGIASMFGTWSRPALVIIVLGVLEFNVLSLYSAYMST
VTIFSGFRKMTRVGGLVKFLVLSITAAVATIIAIGTQYHFNDYFADILNAQIYVLVPWSS
INLVDYYLVRKGEYSVTEMYDSRGRYGRFNMPTLAIYCLGIASTLPFMDLSFYHSYFARM
IGADVSWIPSLLVPGVLYYFANRAVAMESEAVIN