Protein Info for QEN71_RS33920 in Paraburkholderia sabiae LMG 24235

Annotation: XRE family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 PF13560: HTH_31" amino acids 26 to 80 (55 residues), 42 bits, see alignment E=3.2e-14 PF12844: HTH_19" amino acids 27 to 86 (60 residues), 33.9 bits, see alignment E=9e-12 PF01381: HTH_3" amino acids 30 to 83 (54 residues), 55.5 bits, see alignment E=1.6e-18 PF13443: HTH_26" amino acids 38 to 85 (48 residues), 29.3 bits, see alignment 2.9e-10 PF07883: Cupin_2" amino acids 135 to 202 (68 residues), 39.3 bits, see alignment E=1.5e-13 PF02311: AraC_binding" amino acids 139 to 187 (49 residues), 21.9 bits, see alignment E=4.4e-08

Best Hits

KEGG orthology group: None (inferred from 97% identity to bph:Bphy_5912)

Predicted SEED Role

"Transcriptional regulator, MerR family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>QEN71_RS33920 XRE family transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MKSEKEPDLTTQLEETGDGRSIESFLGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIEN
GQVSTSLDSIVSLARALGISISALFKNFEHSEGNAQHVKAGKGMEVVRRGTTKGHTYHLL
AYDQGPVKLFEPFLITMDDEAEVFPTFEHPGTEFIYMLQGKMEYRHGNRSYLLQPGDALT
FRGSVAHGPERLIKLPIRFITVIMYGQSPELDT