Protein Info for QEN71_RS33870 in Paraburkholderia sabiae LMG 24235

Annotation: carbohydrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 112 to 291 (180 residues), 69.9 bits, see alignment E=1.3e-23

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 67% identity to sno:Snov_0844)

Predicted SEED Role

"Various polyols ABC transporter, permease component 2" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>QEN71_RS33870 carbohydrate ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MNAPSTQPSAALTGNGTLTARARRARTARRNATAWHFLGLLVVFLSSVFPFYWMVTTSLK
SQAQALAYPPVWLFKPTFAHYAEALFTHEVGGSLINSLIIASSTTVLSILLGTPAAYALA
RYEFRGKEDLWFWFISNRMVSPVVLAVPFFLIATKLDIVDTHIVLILLYITFSLPIVIWI
CTDQFRNIPVELDEAARLDGASPWRIFWRINLPLAMPGIVVSAIFAFIFSWNDLLYALVL
TRTDAITSPVAATSYMSGYELPWGEIMATGTLIVLPMVVFALLVSGRLVQGLTMGAVK