Protein Info for QEN71_RS33295 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 30 to 50 (21 residues), see Phobius details amino acids 56 to 79 (24 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details amino acids 375 to 398 (24 residues), see Phobius details amino acids 405 to 425 (21 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 386 (364 residues), 101.6 bits, see alignment E=4.6e-33 amino acids 262 to 437 (176 residues), 42 bits, see alignment E=6.1e-15 PF00083: Sugar_tr" amino acids 24 to 231 (208 residues), 76 bits, see alignment E=2.8e-25 amino acids 244 to 400 (157 residues), 27.6 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: None (inferred from 95% identity to bph:Bphy_6411)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>QEN71_RS33295 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTAVPTTEPHGKHQSKKAAASGWIGSALEYYDFFIYATASALIFPQIFFAKGNATTAIVA
SLATYGVGYVARPIGAFVLGHLGDTHGRKNVLLWCMFMMGFSTIGVGLLPTYAQVGVLAP
VLLVVLRLVQGFAVAGEISGASSMILEHAPFGRRGFYSSFTLQGVQAGQILAAAVFLPLA
HYMPTDQFNTWGWRIPFLLSFVVIIAGWIIRRKVDETPAFKDEGQRQTRARSPVVDAFKY
SSPNMLRVVCMSLMNVIPVVATIFGAAYAVQPAYGIGFAKDVYLWIPVVGNIVAVLVIPY
VGNLSDKIGRKPPMIVGSLVAGLLAFAYLYAISIHNVPLAFLMSLLMWGVVYQGYNAVFP
SFYPELFPTRTRVSAMAIAQNVGTAITAMLPALFTAVAPPGSTNIWLTVGGLAFAVTVIA
SLAALSARETYRVHMNDLGQPDAKPVDKTEYDRLRSDAFAH