Protein Info for QEN71_RS32465 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13379: NMT1_2" amino acids 66 to 269 (204 residues), 39.4 bits, see alignment E=6.5e-14 PF09084: NMT1" amino acids 112 to 269 (158 residues), 40.7 bits, see alignment E=2.6e-14

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 83% identity to bch:Bcen2424_1974)

Predicted SEED Role

"Alkanesulfonates-binding protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization or Putative sulfate assimilation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (477 amino acids)

>QEN71_RS32465 ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235)
MTIRYARFIAASIAPLAFMLAASNVHAETIRVAIGTQDTTINCATGGLLIRELHLLDKYL
PHTGKYKDVTYDVQWKDFTSGAPITNEMVAGKLDFGTMADFPGSLNGAAFQKAGRKSIFI
TVLSGSVDGSGNGIVVPENSPLRSIADLKGKTISVPFASTSHGMLLRAIKAQGWNPDTDV
NIITQAPEVAGSALKANKIDAHADFVPFADLFPYRGIARKIYDGAQSHAPTYHGALVDAA
YAQKYPEVVVAYLRAAIEANQLIAQDPEKYSLLIQKTTGIEAPVDYLYHGPLGIQTRDLT
WKPEYRQATATAIDTLKLLKKTDVDLDVNTFIDDRYIREAFKESGLDYNAALKNYAKQPL
VANDALTGKPIRDFNDVTQVWLESEAKVRNYASPAEAFAALGKIEQSGGKTRAVFVHDHA
SGLKLFANQAWYVKDAHGAITAFLLKTGADRYAQQVSGAVVDYAAAKTGAAQAVASR