Protein Info for QEN71_RS32215 in Paraburkholderia sabiae LMG 24235

Annotation: sodium:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 73 to 97 (25 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 233 to 254 (22 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 317 to 345 (29 residues), see Phobius details amino acids 365 to 382 (18 residues), see Phobius details amino acids 388 to 410 (23 residues), see Phobius details amino acids 419 to 439 (21 residues), see Phobius details amino acids 458 to 476 (19 residues), see Phobius details PF00474: SSF" amino acids 35 to 428 (394 residues), 80.3 bits, see alignment E=6.9e-27

Best Hits

Swiss-Prot: 54% identical to YHJB_BACSU: Uncharacterized symporter YhjB (yhjB) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 54% identity to bsn:BSn5_17110)

Predicted SEED Role

"Acetate permease ActP (cation/acetate symporter)" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>QEN71_RS32215 sodium:solute symporter (Paraburkholderia sabiae LMG 24235)
MNVPLIIVALTLLGAFALAIRARRGISMNLEQWSVGGRGFSALLVFVLMAGEIYTTFTFL
GASGFAYGYGGAAFYIIVYTTQAFVLSYWLLPAIWRFANKHKLLTQADFFARKYDSPFIG
LLVAGISLTALLPYLILQMKGLGILVEGTSYGRISSGAAVWIGAIGMAAYVVVSGLHGSA
ATAIVKDVVVLAVCVFLGIYLPCHYYGSLTGMFRALDAAKPGFLALPAVGKNLTWYLSTI
AVCGPGMFMWPHAFSSIYTAKSEDHFRRNAATMPLYALVMLFSMFVGLAAVLQIPELKGG
QIDLALLKLSIKSFDPWFVGVIGAAGLLTALVPGSIMLVSVATLFTRNIYSLVRPRVSDA
HLSRVAKIAALVLTVVSVETALNGVQSIVSLLIMGYGLVSQVLPALLMSLLRNNPINKYG
AGAGMIAGLGTVSLPVLTGNSLATLFPSNTWIADLNPGLIGLILNLAVMFSFSALTRRAA
VNVPA