Protein Info for QEN71_RS31650 in Paraburkholderia sabiae LMG 24235

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF01266: DAO" amino acids 4 to 409 (406 residues), 182.7 bits, see alignment E=2.3e-57 PF01593: Amino_oxidase" amino acids 192 to 273 (82 residues), 19.8 bits, see alignment E=6.5e-08

Best Hits

Predicted SEED Role

"D-amino acid dehydrogenase small subunit (EC 1.4.99.1)" in subsystem Pyruvate Alanine Serine Interconversions or Respiratory dehydrogenases 1 (EC 1.4.99.1)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.99.1

Use Curated BLAST to search for 1.4.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>QEN71_RS31650 FAD-dependent oxidoreductase (Paraburkholderia sabiae LMG 24235)
MAEIGIVGAGFIGLASAGWLMRDGHRVTLFDPSGVAQGASFGNAGTFAPYGCIPVNNPSV
FRDLPRFLLSSESPFRLRWSYLPHVMPWLARFMVNSTRSRYEASAGALAALLAQAQAGYA
PLLEEPALAKYVRPRECLYLYSSAASFDASRASLNLREQLGVSFDASRASLNLREQLGVS
FDVLSGADVRALEPSLAPIFERGVLFSDSWHFSDPQGFLTSLYELLATRGLELERKAVSA
LAPAAQGVTLTTDDGVQRRFDHVVVATGARSAKFAAQCGDRVPLDTERGYHVRYRGATQL
ISRPVGWAERGFYMTPMDDGVRVAGTVELGGFSDERNRSLLDLLTFSSKRALPALQQPDS
SWLGFRPTMPDGVPVLGRASASERVIYAFGHQHLGLTLAGVSGRIVSDLVARRSPPLDLS
RYAATRF