Protein Info for QEN71_RS31195 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 357 (22 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 388 (361 residues), 173.7 bits, see alignment E=2.6e-55

Best Hits

Swiss-Prot: 45% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_6697)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>QEN71_RS31195 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTAIQTLRESDAVRALYNRLNWRLLPFLLACYMFAYLDRVNVGFAKLQMQSDLGFSDAAY
GVGAGIFFLGYVLFELPSNLLLPKIGARKTFSRILVLWGLTSACMLFVHNVPMFYGMRFL
LGIFEAGFAPGMIYYLSCWYGPTRMARAIAIVFLAGPLGGIVGGPLSAWLISAFSGVYGL
AGWQWMFLVEGLPCIALGVLTLFVLSNRPADARWLNADEKQLLESETGVAHAHNHSFKAV
VRDPRIYVLAFAYFSIIFPIYAISFWLPTFIKEQGVSDTLRLGWYAAIPYVAAGIAMYVA
GRSSDRTGERRLHCAVPALTGALLLIASIFTQGNLFATLALLTAATAMMWMAYTVFWAMP
GEYIKGPAAAGGIALINTIGLSGGFWGPAAIGWARTATGNSHLALIVMACMPVIAGLLIL
ASSRSRKPARDAAELALSPESN