Protein Info for QEN71_RS30900 in Paraburkholderia sabiae LMG 24235

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 TIGR00229: PAS domain S-box protein" amino acids 46 to 134 (89 residues), 35.4 bits, see alignment E=5.1e-13 PF00989: PAS" amino acids 48 to 142 (95 residues), 34.9 bits, see alignment E=4e-12 PF13426: PAS_9" amino acids 50 to 125 (76 residues), 29.6 bits, see alignment E=2.1e-10 PF07730: HisKA_3" amino acids 172 to 239 (68 residues), 51.6 bits, see alignment E=3.5e-17 PF13581: HATPase_c_2" amino acids 259 to 348 (90 residues), 39.1 bits, see alignment E=2.2e-13 PF02518: HATPase_c" amino acids 283 to 374 (92 residues), 47.4 bits, see alignment E=7.2e-16

Best Hits

Predicted SEED Role

"putative PAS/PAC sensor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>QEN71_RS30900 histidine kinase (Paraburkholderia sabiae LMG 24235)
MHAITPPEPPVRLRDLIDAMRKLGHAARHAQPHAGHAAHVSDARGAALAVTTCDGAIVSV
NRSATVLFGYANAELAGKQLADFAHDDDHAHAEHEFRSNAAEAFRSFDVTLVGRTGHRLF
LRVFQQSIATDASNAPLRLLMFVEPLTLANVNSIDGDTHAFTNWLFMGQQRERERLAAEL
HDGMGQALTLIKLMVEDARMRLRAGHTDDAAQLLDSTVLQIRDTIGEMRQICGELRPLAL
ERLGLPAALSTLCRRVEKSVETLRVAFACGVEDGEIRDHLKADIFRVVQEALNNIVKHAD
ASEVRVDLQRDGAYLRLSIHDNGSGYDHHPLNSNDARTNGLGLIGMQHRVEAQGGVFALN
PGDDGGTEITAHWRL