Protein Info for QEN71_RS30705 in Paraburkholderia sabiae LMG 24235

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 PF00126: HTH_1" amino acids 8 to 66 (59 residues), 69.5 bits, see alignment E=1.9e-23 PF03466: LysR_substrate" amino acids 90 to 281 (192 residues), 87 bits, see alignment E=1.2e-28

Best Hits

Swiss-Prot: 84% identical to DGDR_BURCE: HTH-type transcriptional regulator DgdR (dgdR) from Burkholderia cepacia

KEGG orthology group: None (inferred from 82% identity to bur:Bcep18194_B0666)

Predicted SEED Role

"HTH-type transcriptional regulator dgdR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>QEN71_RS30705 LysR family transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MSLSLEIDLLRSFAVIAEVRALSRAASRVGRTQSALSQQMKRLEEIVDQPLFQRTGRGVV
LTNAGERLLIHAQRILRLHDEAMADLCGTGLSGSIRFGCPDDYAAVFLPPLLRQFSSQHP
HALVEVVCGPTPRLLERLKKGAVDLAMISLPDSGPGDDVIRREQLVWIGYPGLDSAHFDP
LPLALSDPDTLDHIAACDALQRAGRAYRIAYASSSLSGLTALVRSGQAFAVMTQTAVPSD
LSVLSADHELPPLPAVGVSLRFARARPSLLTSAFADHIKAMLPLL