Protein Info for QEN71_RS30675 in Paraburkholderia sabiae LMG 24235

Annotation: AEC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 66 to 87 (22 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 125 to 149 (25 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 286 to 306 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 5 to 300 (296 residues), 122.2 bits, see alignment E=9.9e-40

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 95% identity to bph:Bphy_6747)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>QEN71_RS30675 AEC family transporter (Paraburkholderia sabiae LMG 24235)
MLDRIVGPLLPVAFVIVLGFIAGKRGRLNHSDSLLISRLVLGWIFPALLLVGMASTPRSQ
LFDFRLIVATFIGIMGMYTFALLIGWWRYRELRAATLKGFVNGYPDAAFMGIPILQAMFG
PGSIYSVLILNLIASLFMIPLTTMLLTVASGQGSGTQAFLTSIKSAVRRPLMWAPALGIL
CSLLQIKFPPVLAEAFNLLGKATPGVSLLCLGLIMSSVKLKLSNEVWANLGLKLLIHPLL
MFAATVLLGVHGLYAQQMILLCALPSATIPAMFANEAGAYQSEAATSILVSTVLSIITFS
AAIYLVDGGLAAA