Protein Info for QEN71_RS30085 in Paraburkholderia sabiae LMG 24235

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 50 to 73 (24 residues), see Phobius details amino acids 83 to 108 (26 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 197 to 205 (9 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 66 to 243 (178 residues), 43.1 bits, see alignment E=6e-15 PF00005: ABC_tran" amino acids 302 to 427 (126 residues), 99.8 bits, see alignment E=3.2e-32

Best Hits

KEGG orthology group: K02018, molybdate transport system permease protein (inferred from 73% identity to bxe:Bxe_B1189)

Predicted SEED Role

"Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) / Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (627 amino acids)

>QEN71_RS30085 ATP-binding cassette domain-containing protein (Paraburkholderia sabiae LMG 24235)
MTRPTARPLLWLACLLAVYLCAPFVASIPQIDHADWAGVDWRGTWSAVGVSAGSASVAAL
AILIGGVPLGYWLARSRSRGMALLGFIVQLPLALPPLTSGILLLFLLGPYSWLGRLTNGA
LTDSFTGIVLAETFVAAPFLVVAARSAFAAIDPVYDDVAATLGHRAVSRFFRVMLPIAWP
SIRAGLVLAWLRAFGEFGATVMVAYHPYSLPVYTYVVFGGQGLPAMMPLLLPTLVIAVLC
AALSVAWRGDRPRLFEIADNGDAADQPVAEAARPALPNPRLAFALKRHLGAFDLDIEWMP
STRRLAIIGPSGSGKSLALKLIAGLERNEAGFVRFGDKQLDTLPPEQRHVGYVPQDYGLF
PHMTVARQLSFPVDADAASARYWVEHLGLSALTARLPRQLSFGQRQRVALARALSRHSQL
LLFDEPFSALDTPRRRRLQQSLRALQREISAVTVLVTHDPDEAALLADEVLVIERGRVLQ
AGTVDQVFRQPASLQVAALLGLHNVGVGTIGAPGTIDTASGLSIEIADHSVPVGENVMWR
VAPSSIRIARDGAYPGVIDSVELRHGDLYAVANIGGMRFDIACDGEPDNALACGPARFSI
DARGVSAWLSGVSVSAVGNESPVSSHA