Protein Info for QEN71_RS29990 in Paraburkholderia sabiae LMG 24235

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 12 to 53 (42 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 179 to 233 (55 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 273 (265 residues), 120.5 bits, see alignment E=3.9e-39

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 68% identity to bja:bll3662)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>QEN71_RS29990 branched-chain amino acid ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MAEMVLSQIANGLVLGFLYVLLAIGLSIICGLLGIVNFAHGALFALGAYFAIALSMQFGW
AAVIVAPVLVALVGMLIEVIFIRRLYGKEPLLGLIVTFALSLLLTALIRLVWGAGGLPFS
PPAALNGFLVYGPLLITKYRLFVLAATVAILLALWWFMKFTPYGRILRAGSRDPEMVGLL
GINLPRVLTGAFGLGALLAGAAGVLAAPLLTVTPSMATAAVMPAFVIVTIGGLGSFAGAV
VAGLLVGIVTALAVQFFPEGSSVAMYVLMALVLLVRPRGLFGERWERFE