Protein Info for QEN71_RS29685 in Paraburkholderia sabiae LMG 24235

Annotation: indolepyruvate ferredoxin oxidoreductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 transmembrane" amino acids 751 to 773 (23 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 482 to 565 (84 residues), 25.2 bits, see alignment 2e-09 PF01558: POR" amino acids 759 to 944 (186 residues), 53.9 bits, see alignment E=4e-18 PF20169: DUF6537" amino acids 976 to 1178 (203 residues), 213.9 bits, see alignment E=3.7e-67

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1197 amino acids)

>QEN71_RS29685 indolepyruvate ferredoxin oxidoreductase family protein (Paraburkholderia sabiae LMG 24235)
MNAPDRAVSSEVSELSELSSVTLEDKYTLEKGRVYISGTQALVRLPMLQKARDLKAGLNT
AGFISGYRGSPLGALDQSLWKAKKHLQANDVVFQPGVNEDLAATAVWGTQQINLWPGATR
DGVFGMWYGKGPGVDRTGDVFKHANSAGSDARGGVLVLAGDDHAAKSSSVAHQSEHAFIA
AGIPVLYPANVQEYLDYGLHGWAMSRYSGLWVAMKCVTDVIESTASIDLDPDRVEIVTPT
DYAMPEGGLNIRWPDSPLAQEARLLDEKWYAALAYIRANKLNRVVIDSDKPRFGIITAGK
AYLDVRQALSDLGLDDETCAKIGLRVLKVGCVWPLDAQDARAFATGLEEILVVEEKRQIL
EYALKEELYNWREDVRPKIYGKFDERDNEGGEWSVPRGDWLLPAHYELSPALIAKAIARR
LARADLPEDVRARMLARVAIIEAKEREAAKPRVAVERKPWFCSGCPHNTSTNVPEGSRAL
AGIGCHYMSMWMDRKTETFSQMGGEGVAWIGQMHFSGDKHVFVNLGDGTYFHSGLLAIRA
AIAANANITYKVLYNDAVAMTGGQPVDGVLTVPQIAHQVHAEGAKRIVIVTDEPEKYHSG
IVLPNGVDVHHRDQLDTVQRTLRDMPGTTVLIYDQTCATEKRRRRKRGTYPDPARRAFIN
DAVCEGCGDCSVKSNCLSVEPLDTPLGTKRKINQSSCNKDFSCVNGFCPSFVTAEGAQLR
KPKAASGDKSAGKPDFDALPMPSLPALAKPYGILVTGVGGTGVVTIGGLIGMAAHIERKG
VTVLDMAGLAQKGGAVLSHVQLASAPDALHATRIATGEARLVIGCDAIVSASNDVLSRTQ
HGVTVAAINSGATPTAEFVKNPKWTFPGTQTEAELRDSIGEGCAFIDANALALTLLGDTI
YSNPLLLGFAWQKGWLPLQLSSLLRAIELNAVAVEKNQQAFNWGRYIAQHGDAAVRALVK
PAAAPQAIVMQMPESLDKLIASREVLLTAYQNDAYARRYRRVVDGIRAKEMEIGGHSKLP
LTRAVATNLAKLMAYKDEYEVARLYADPAYLEKLRQQFEGEPGRDYKLSFYLAPPMFAKR
DERGHLQKKRFGPWMLSAFRVLARMKGLRGTALDVFGKTAERRGERQLIADYIALVDEFC
ATLDFERLPVALQLASLPDDIRGFGHVKERNLLAAATKKERLVGEYRKTPEQLTASA