Protein Info for QEN71_RS29355 in Paraburkholderia sabiae LMG 24235

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 62 to 80 (19 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 248 to 273 (26 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 34 to 304 (271 residues), 120.6 bits, see alignment E=1.1e-38 PF00005: ABC_tran" amino acids 362 to 521 (160 residues), 114.8 bits, see alignment E=7.3e-37 PF12399: BCA_ABC_TP_C" amino acids 571 to 592 (22 residues), 39.9 bits, see alignment (E = 3.7e-14)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 98% identity to bph:Bphy_3041)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (594 amino acids)

>QEN71_RS29355 branched-chain amino acid ABC transporter ATP-binding protein/permease (Paraburkholderia sabiae LMG 24235)
MNRIMKNKFFWIFLVVMFALPVLPQPIRVPEYWVTLLNYIGLYSIVAIGLVLLTGIGGMT
SFGQAAFVGVGAYTTAYMTTQLGVSPWLALIAGVVLTALIALLLGAVTMRLSGHFLPLGT
IAWGLALFFLFGNMEMLGKYDGINGIPVLNVLGINLESGRHIYYLIWVVVLVAVVSVQNL
LNSRPGRAIRALRGGGLMAEAMGVNTAWMRVVIFVYAAVLAAISGFLYAHLQRAVNPTPF
GLNHGIEFLFMAVVGGVAHVWGAVLGAAILTVLQDYLQTLLPKLLGENGNFEIIVFGILM
VLLLQYARQGVWPFVARIFPRGPRAHVPDHADALPQRSKPATGESLLVVDKARKQFGGLV
AVNDVSFEVKAGQIIGLIGPNGAGKSTTFNLVTGVLQATSGAISFRGERIDALNSREIVK
RGIGRTFQHVKLLPGMTVLENVAIGAHLRGHAGVWRSVARLNAAEEARLMAEAARQIRRV
GLEEHMYDEAGSLALGKQRILEIARALCCDPTLLLLDEPAAGLRYQEKQQLATLLRKLRE
EGMSVLLVEHDMDFVMNLTDRLVVMEFGTRIAEGLPQDVQNDPAVLEAYLGGVE