Protein Info for QEN71_RS28450 in Paraburkholderia sabiae LMG 24235

Annotation: indolepyruvate ferredoxin oxidoreductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 transmembrane" amino acids 746 to 767 (22 residues), see Phobius details PF02775: TPP_enzyme_C" amino acids 481 to 570 (90 residues), 26.2 bits, see alignment 9.6e-10 PF01558: POR" amino acids 754 to 941 (188 residues), 70.4 bits, see alignment E=3.3e-23 PF20169: DUF6537" amino acids 983 to 1187 (205 residues), 222.2 bits, see alignment E=1e-69

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1205 amino acids)

>QEN71_RS28450 indolepyruvate ferredoxin oxidoreductase family protein (Paraburkholderia sabiae LMG 24235)
MNAPLDAGQRASLEAALNSVTLDDKYTLERGRAYMSGIQALVRLPMLQQERDRAAGLNTA
GFISGYRGSPLGGLDLSLWKAKQHLAAHQVVFQPGVNEDLAATAVWGSQQVNLYPSAKYD
GVFSMWYGKGPGVDRSGDVFKHGNSAGSSRHGGVLVLAGDDHAAKSSTLAHQSEHLFKAC
GLPVLFPSNVQEYLDFGLHGWAMSRYSGLWVAMKCVTDVVESSASVDIDPHRTQIILPGD
FDMPEGGLNIRWPDPPLVQEARLLDYKWYAGLAYVRANKLDRIEIDSPHARFGIMTGGKA
YLDVRQALTDLGLDDETCSRIGIRLYKVGCVWPLEAQGAQAFARGLQEILVVEEKRQILE
YAIKEELYNWPDAQRPRVFGKFDEKDGAGGEWSVPMGNWLLPAHYELSPALIAKAIATRL
DKFDLPSDVRARIAARIAVIEAKEKALARPKVAIERKPWFCSGCPHNTSTNVPEGSRAMA
GIGCHYMTVWMDRSTSTFSQMGGEGVAWVGQAPFTNDKHVFANLGDGTYFHSGLLAIRAA
IASKANITYKILYNDAVAMTGGQPVDGTLTVPQITHQLAAEGAKKIVIVTDEPEKYDANV
GLAPGIDIHHRDKLDDVQRELREIEGTTILIYDQTCATEKRRRRKRGAYPDPAKRVVINE
AVCEGCGDCSVQSNCLSVEPLETEYGTKRQINQSTCNKDYSCLKGFCPSFVTVEGGQLRK
PKASGVASDAMPPVPDPDIPAIARPYGVLVTGVGGTGVVTIGALLGMAAHLESKGVTVLD
VTGLAQKGGAVMSHVQIANQPADIHATRIAMGEANLVIGCDSIVTASDECVSRMQAGRTH
VVLNSAPTPTAEFIKNPNWRFPGASADADVRAAAGDDSVSSVDANHFAVALLGDAIYTNP
FVLGYAWQKGWLPLTHESLIRAIELNAVQVEKNRAAFEWGRRAAHDLAAVRKLAQIQDRI
DDGNTANAASSKIVSLHTPKALDTLIDKRAQYLAAYQNDAYARRYRKLVDEVRAAETKLD
SADGQMPLTEAVAKNLHKLMAYKDEYEVARLYSDPAFIEKLKANFEGDWKLKFHLAPPAT
ATTDSHGHLVKKQYGPWMLNAMHVLAKMKFLRGTALDVFGKTEERRTERALIVEYEVLVR
ELIGGLTAEKAAEKRALAVELANLPDGIRGYGHVKDNNLKGVRAKWASLLAKWRAPEGGA
ERHVA