Protein Info for QEN71_RS27945 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 174 to 178 (5 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 273 to 292 (20 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 22 to 297 (276 residues), 189 bits, see alignment E=1.8e-59 PF05992: SbmA_BacA" amino acids 26 to 346 (321 residues), 146.7 bits, see alignment E=1.8e-46 PF00005: ABC_tran" amino acids 395 to 526 (132 residues), 62.3 bits, see alignment E=1.2e-20

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 96% identity to bph:Bphy_2775)

Predicted SEED Role

"ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27)" (EC 3.6.3.27)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.27

Use Curated BLAST to search for 3.6.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (577 amino acids)

>QEN71_RS27945 ABC transporter ATP-binding protein/permease (Paraburkholderia sabiae LMG 24235)
MIDNSKNPSDITAWGLIKPYWVSEDRWKARGLLALVIAMNMTMVAANVWFNSWQRTFFDA
IQQYNYPVFKESLLQFTVIALALILLGSYRTYFRQMLEFRWRQWLTNRYLNDWLGDRAYY
RIERDSLADNPDQRVSADLQGLASATLNLSLGLLSTTVTLFSFIVILWNLSGALAFHVFG
TEVSIPGYMVWAALVYAALGSWVTHKVNHPLVSINYQQQRVEADFRFSLIRIRENADQIA
LYQGERSEEQALKGVFGHIRDNWRLIMRFTRRFNIVVISYSQLAIVFPYIAAAPKYFSKS
ISLGVYQQVTGAFGTVSDSFSWFINNYDSLAEWRATVNRLREFNRVMRSQHLHESVVEGT
AHGGINVHLTDTDSINVTDLRLQRPDGEAMANVGSFRIAPKSRWLVRGPSGAGKSTLMRT
LAGLWPFGEGTIEMPADAKLLFIPQRSYLPIGTLKAALAYPSDVSAFSDEACREVLTVCR
LSEFADRLGESSHWERSLSPGEQQRLAAARALLQQPDFLFLDEATSALDPDNESNIYNAL
IERLPNAAIVSVAHRKTLEAFHDQTLFIERAIEREAA