Protein Info for QEN71_RS27310 in Paraburkholderia sabiae LMG 24235

Annotation: type II secretion system F family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 172 to 194 (23 residues), see Phobius details amino acids 214 to 239 (26 residues), see Phobius details amino acids 261 to 276 (16 residues), see Phobius details amino acids 378 to 400 (23 residues), see Phobius details PF00482: T2SSF" amino acids 68 to 195 (128 residues), 100.8 bits, see alignment E=2.7e-33 amino acids 276 to 398 (123 residues), 83.6 bits, see alignment E=6e-28

Best Hits

Swiss-Prot: 40% identical to TAPC_AERHY: Type IV pilus assembly protein TapC (tapC) from Aeromonas hydrophila

KEGG orthology group: K02653, type IV pilus assembly protein PilC (inferred from 90% identity to bph:Bphy_2656)

Predicted SEED Role

"Type IV fimbrial assembly protein PilC" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>QEN71_RS27310 type II secretion system F family protein (Paraburkholderia sabiae LMG 24235)
MSDTAIREQRFEWRAFDTQGMRRRGTVIAPDISTARATLKQDALYAVEWIARGPAPQPTA
RAADVTLFTRQLSSLLRAGLPLAPSLELLAQASKDSTRAKGMPRIVNALARDITAGVGFS
SALARHPAQFNALYCQLVEVGEASGALPTVLARLADDRERAAAQRAKVRAALTYPVAILL
LALAITTALLVWVVPTFKQIFDGFGAKLPAPTQIVLAMSAAAGRWSVPLASIACALVFAM
RHVLRRSEVARLHFARTALRLPFAGPLLATLCAARWSRALGTLLSAGTPLADAFDSLTHA
TGNAWFDRATVSISAELRRGVRLAPAMRDARCFPEEIVQPVAVAEESGTLDTMLLDVASL
SDRQVDEKISGLASLCEPLVIVVLGGLVGGLVVAMYLPIIQLGNVV