Protein Info for QEN71_RS26720 in Paraburkholderia sabiae LMG 24235

Annotation: NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details PF02233: PNTB" amino acids 7 to 480 (474 residues), 629.2 bits, see alignment E=2.4e-193

Best Hits

Swiss-Prot: 60% identical to PNTB_RHORU: NAD(P) transhydrogenase subunit beta (pntB) from Rhodospirillum rubrum

KEGG orthology group: K00325, NAD(P) transhydrogenase subunit beta [EC: 1.6.1.2] (inferred from 98% identity to bph:Bphy_2541)

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (483 amino acids)

>QEN71_RS26720 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta (Paraburkholderia sabiae LMG 24235)
MSLNVVTLLYLIASVCFIQALKGLSNPKTARTGNLFGMVGMAIAILTTVALIAKQAAVLG
SNLSLGLSLVFVALIVGGGIGAFVAARVEMTKMPELVAAMHSLIGMAAVCIAYAVVSEPA
AFGLGAEEGIPGFLPYGNRIELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVVYP
GQHLINLLLALAMIGFGVIFFLTQSWLPFIIMTLIAFALGVLIIIPIGGADMPVVVSMLN
SYSGWAAAGIGFSLNNAMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGEAGAA
AAAGSGEQKPVKSGSAEDASFMLGNAETVVIVPGYGLAVARAQHALKELTDLLIEKGVDV
KYAIHPVAGRMPGHMNVLLAEAEVPYEIVHEMEDINGEFGQVDVVLVLGANDVVNPAAKT
DPKSPIAGMPIIEAYKARTVIVNKRSMAAGYAGLDNDLFYMDKTMMVFGDAKKVIEDMVK
AVD