Protein Info for QEN71_RS26190 in Paraburkholderia sabiae LMG 24235

Annotation: DUF883 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 transmembrane" amino acids 79 to 97 (19 residues), see Phobius details PF05957: DUF883" amino acids 7 to 57 (51 residues), 54.1 bits, see alignment E=1.1e-18 PF19029: DUF883_C" amino acids 71 to 100 (30 residues), 63.8 bits, see alignment E=8.9e-22

Best Hits

Swiss-Prot: 31% identical to YQJD_ECO57: Uncharacterized protein YqjD (yqjD) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 94% identity to bpy:Bphyt_0774)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (100 amino acids)

>QEN71_RS26190 DUF883 family protein (Paraburkholderia sabiae LMG 24235)
MSEVNKERLMSDIKTVLADAEDLLKQAASATGERASELRETALSRLKQAKEKAADVQVVV
VEKGKKAARATDDYVHEHPWASIGIAAGVGVVVGLLINRK