Protein Info for QEN71_RS24935 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 158 to 179 (22 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details amino acids 374 to 400 (27 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 398 (363 residues), 168.6 bits, see alignment E=1.8e-53 PF00083: Sugar_tr" amino acids 61 to 425 (365 residues), 39.7 bits, see alignment E=2.9e-14

Best Hits

Swiss-Prot: 48% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 97% identity to bph:Bphy_2176)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>QEN71_RS24935 MFS transporter (Paraburkholderia sabiae LMG 24235)
MSSPANPLHHPGAGAPPSTFEEATYRKVAWRLTPLLMLSYVVAYLDRVNVGFAKLGMSTD
LGLSDAVYGFGAGIFFIGYFIFEVPSNIILHRVGARVWIARIMVTWGIVSMLTMFVTTPT
MFYVMRFLLGLAEAGFFPGIILYLTYWYPAQRRGRMTTWFMTAIAISGVVGGPISGYILK
SFDGTNGWHGWQWLFLLEGVPSIIVGILVFIVLDDRISKATWLTKEERELLERNIAAEDA
TKEDHAIGKVMLSPRVLMMSLIYFSFVMGLYGVSFWLPTIIKSTGVTDAFMIGLLSAIPF
AAAVIAMVFVARSADRTRERRWHVAVPGFAGALGLVLSVVWAKDTTLAMAALTLATMGIL
TTLPLFWSLPTSFLAGTGAAAGIALINSIGNLAGFLSPYAVGWLKQATSANAAGMYMLAA
FMILGGLLALCVPARLVNR