Protein Info for QEN71_RS22650 in Paraburkholderia sabiae LMG 24235

Annotation: tRNA dihydrouridine(20/20a) synthase DusA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 TIGR00742: tRNA dihydrouridine synthase A" amino acids 10 to 324 (315 residues), 462.8 bits, see alignment E=3.4e-143 PF01207: Dus" amino acids 14 to 312 (299 residues), 272.9 bits, see alignment E=1.7e-85

Best Hits

Swiss-Prot: 62% identical to DUSA_PSEPK: tRNA-dihydrouridine(20/20a) synthase (dusA) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K05539, tRNA-dihydrouridine synthase A [EC: 1.-.-.-] (inferred from 97% identity to bph:Bphy_1641)

Predicted SEED Role

"tRNA dihydrouridine synthase A"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.-.-.-

Use Curated BLAST to search for 1.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA (Paraburkholderia sabiae LMG 24235)
MSSKPTVSPRRVSVAPMMDWTDRHCRSFHRTLSRHTWLYTEMVTTGALIHGDVARHLAFT
ADEAPVALQLGGSERDDLARSAKLGEQWGYDEINLNCGCPSERVQRGAFGACLMKEPELV
ADCVKAMRDVVSVPVTVKHRIGVDDVEDYAFVRDFVGTIAEAGCEVFIVHARNAILKGLS
PKENREIPPLKYDYAYRLKRDFPQLEIIINGGIKTLDEVETHLQHVDGVMLGREAYHNPY
VLADVDARFYGSTDIAPTREEAEAQLIEYCRAELARGTYLGAIVRHALGLYRGVAGARGW
RRVLSDNKKLAARDLAIFDEARQHLREPSEIFE