Protein Info for QEN71_RS22420 in Paraburkholderia sabiae LMG 24235

Annotation: glycosyltransferase family 39 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 80 to 108 (29 residues), see Phobius details amino acids 113 to 134 (22 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 172 to 203 (32 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details PF02366: PMT" amino acids 14 to 238 (225 residues), 50.9 bits, see alignment E=2.5e-17 PF13231: PMT_2" amino acids 69 to 231 (163 residues), 45.1 bits, see alignment E=2e-15 PF18583: Arnt_C" amino acids 477 to 580 (104 residues), 137.6 bits, see alignment E=1.6e-44

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_0928)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (601 amino acids)

>QEN71_RS22420 glycosyltransferase family 39 protein (Paraburkholderia sabiae LMG 24235)
MNDKPSGLTLNRTTVLLLVLTLAVIWFVPLGWRHLLPSDEGRYAEMAREMFLTGDWITPR
YNGYKYFEKPPLQTWANALSFAWFGIGAWQARLYTALTGFAGVLLIGYTGARVFNVATGF
FAAVVLASAPYWYLMGHFNTLDMGLSFWMELTLCGLLLAQRPGLAAREQRLWMWAVWASM
ALAVLSKGLVGLILPGAVLVLYTIIARDWALWKRLYLVSGLIVFFAVVTPWFVLVQDRNP
EFFNFFFIVQQFRRYLTPEQNRPGAWYYFVPVMLVGFLPWLSVTVQSARHALRMPRQANG
FAPITLLFVWTAFIFLFFSASHSKLLSYTLPIAPAIALVIGMYLPLVTREQFHRHLTGYA
LFLVAGGFGAVFLGRLGDARNPNALYLEFRNWVFAALAVGFVFTVIAIWLNRRRQMAAAG
ALNGSANGSTVAPSGSQSTGIVGAATAFGIGWVLLATIAGTGHDAFGRLSSGAPLAPAVK
AALAKLPADTPFYSVGVLDHTLPFYVGHTTIMVEHADELAFGVSVEPQKWVPTIPQWVER
WKADRYALALMSPDRYKEFSAQHLPMTVVARDARRVIVEKPLSGDAGANPAAGTGATQPQ
P