Protein Info for QEN71_RS21330 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 40 to 59 (20 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 129 to 154 (26 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 284 to 307 (24 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 344 to 369 (26 residues), see Phobius details amino acids 382 to 405 (24 residues), see Phobius details amino acids 411 to 431 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 27 to 239 (213 residues), 91.9 bits, see alignment E=6.6e-30 amino acids 240 to 438 (199 residues), 52.7 bits, see alignment E=5.1e-18 PF07690: MFS_1" amino acids 74 to 381 (308 residues), 118.9 bits, see alignment E=3.8e-38 PF13347: MFS_2" amino acids 177 to 405 (229 residues), 28.1 bits, see alignment E=1.2e-10

Best Hits

KEGG orthology group: None (inferred from 86% identity to bgf:BC1003_3878)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>QEN71_RS21330 MFS transporter (Paraburkholderia sabiae LMG 24235)
MASIETTHASGRLDAARPLEDRTLRKIVIASVAGNAMEWYDFFVYGTAAALVFGQLFFPA
GADPLIGTLGAFAAFAMGFVARPVGGIVFGHIGDRYGRKASLVWTLLIMGIATFAIGLLP
TYAQVGIWSPVALVVLRLLQGIASGGEWGGGVLMISESAPPEKRGYYAAWSQLGVGGGFV
LSSGAFLAAQSLPHDAFISWGWRLPFLASIVIFAIGVYIRHSLPESRDFEQTEKRGEKTH
MPVVEVIRRHPKEILMAMGLRVAENGGAYIFLAFSLVYGKFAGIASSVMLTGVMLAMVVE
MAAMLAWGRLSDRIGRKPVYMIGAAGLIVMAFPFFWMLDTHQAPWIYLALILGTAVCHGA
MIGTLPALVGELFSTEVRYSGVALGHEVASIFAGGLSPLIATALLAHYHAYWPVSVFLMI
LGAITVFTLRFTHETRARR