Protein Info for QEN71_RS21005 in Paraburkholderia sabiae LMG 24235

Annotation: cytochrome c biogenesis protein DipZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 64 (25 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 120 to 146 (27 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 199 to 215 (17 residues), see Phobius details PF02683: DsbD" amino acids 7 to 206 (200 residues), 46.7 bits, see alignment E=8.9e-16 PF08534: Redoxin" amino acids 283 to 396 (114 residues), 56.8 bits, see alignment E=6e-19 PF00578: AhpC-TSA" amino acids 284 to 389 (106 residues), 48.3 bits, see alignment E=2.3e-16 PF13905: Thioredoxin_8" amino acids 292 to 387 (96 residues), 39.7 bits, see alignment E=1.3e-13 PF17991: Thioredoxin_10" amino acids 439 to 585 (147 residues), 173.1 bits, see alignment E=1.3e-54

Best Hits

KEGG orthology group: None (inferred from 91% identity to bph:Bphy_5033)

Predicted SEED Role

"DipZ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (585 amino acids)

>QEN71_RS21005 cytochrome c biogenesis protein DipZ (Paraburkholderia sabiae LMG 24235)
MLLIVIAFLGGVLTILSPCILPVVPFVFARSDRPFVTDRLPLLIGLAVTFSVVTGVGIAG
LAGAAQLSHYGRWVSLALFAVFGLSLLFPALWTRVSQPFFSIGNRVEALSHAKGARFQVV
SALLLGAATGLLWAPCAGPILGLILTGAALHGASWQTAAALTAYAFGAASSLAVISGLGK
QAFDSLKRSLGFGEHVRRVMGAVVLLSVVGIGFGFDTRALAHVPSTSTTGVESRLVGLLS
TSHSSNHDDRPHLQRVSLQTPSKLPVEGKLPSLDGAESWINSTPLTADALRGKVTVVNFW
TYSCINCLRTLPYLKTWSDRYGKDGLTVVGVHTPEFAFEHDPSNVKRAVADLGIHYPVAI
DNGYKIWQAFGNQYWPAFYIVDAQGRIRYHHFGEGGYGEAEKVIQQLLADSGHTMQAGDL
PAIHGSGAQAAADTSDVESGETYVGYQQARGFASPQNVRPDDAASYTIPSQLPLNSWAFG
GKWIVGGEAAVLDQANGRIAYRFHARDLHLVLGPAANGKPVRFRVTIDGAAPGESHGADV
AADGSGVVTSARLYQLVRQHDGVRDRTFTIEFLDPGVQAFSFTFG