Protein Info for QEN71_RS20355 in Paraburkholderia sabiae LMG 24235

Annotation: catalase HPII

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 PF00199: Catalase" amino acids 36 to 420 (385 residues), 591.8 bits, see alignment E=1.3e-181 PF06628: Catalase-rel" amino acids 452 to 517 (66 residues), 73.8 bits, see alignment E=2e-24 PF18011: Catalase_C" amino acids 549 to 691 (143 residues), 84.7 bits, see alignment E=1e-27 PF01965: DJ-1_PfpI" amino acids 552 to 657 (106 residues), 34.4 bits, see alignment E=4e-12

Best Hits

Swiss-Prot: 70% identical to CATE_PSEPU: Catalase HPII (katE) from Pseudomonas putida

KEGG orthology group: K03781, catalase [EC: 1.11.1.6] (inferred from 85% identity to bxe:Bxe_B1215)

Predicted SEED Role

"Catalase (EC 1.11.1.6)" in subsystem Oxidative stress or Photorespiration (oxidative C2 cycle) (EC 1.11.1.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.11.1.6

Use Curated BLAST to search for 1.11.1.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (700 amino acids)

>QEN71_RS20355 catalase HPII (Paraburkholderia sabiae LMG 24235)
MASKQRNPSSSAPAEDLKSKDLERSRVRPQNEALRTNQGVKIADNQNTLRAGPRGPSLLE
DFIMREKITHFDHERIPERIVHARGSAAHGVFQVYESMAEYTKAAFLQDPSVQTPVYVRF
STVQGPRGSADTVRDVRGFATKFYTSEGNYDLVGNNMPVFFIQDAIKFPDFVHAVKPEAP
NEMPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPRSLRTMEGFGIHTFRFINAKGAM
RLVKFHWRPVLGSYSVLWDEAQKLAGKDPDFHRRDLWEAIERGDFPEFELGVQIIEEKDQ
DSFDFDLLDPTKLVPEEIVPVKIIGKMTLNRNPDNFFAETEQVAFHPGHVVPGIDFTNDP
LLQGRLFSYTDTQISRLGGPNFHEIPINRPVSPNVNNQRDGMHRQTINVGQASYEPNSVS
DAWPKETDPAATDGGFESYPEPMEGTKIRVRSDSFADHFSQAALFYQSMSDVEKEHIALA
YQFELGKVTKPEIRARVVNEILANFDADLAATVAEGLGLPKPGKGARAVGKQKPSPALSL
LNRVVKGIKTRKIAVMAAPGSDGATIKSVQAALKAEGATPLLVAPTLAAIDGMNPDATIS
GMPSIMFDGVVIVGGEQGAKALAQSGDARHFVLEAFRHLKAIAAIGAGKELLSATHLPEK
ADGVSIGDNGKVDAVLKTFIDAVGQHRVWSRRQAAESVPA