Protein Info for QEN71_RS20345 in Paraburkholderia sabiae LMG 24235

Annotation: ligase-associated DNA damage response exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 20 to 345 (326 residues), 489.1 bits, see alignment E=2.3e-151

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 93% identity to bph:Bphy_4681)

Predicted SEED Role

"mRNA 3-end processing factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>QEN71_RS20345 ligase-associated DNA damage response exonuclease (Paraburkholderia sabiae LMG 24235)
MPCRRGLVHAETTLSQQMDLIVARPEGLYCPQGDFHIDPWQPVERAVITHAHADHARFGH
RRYLAAEPGALVLQSRLPGIELQTLAYGERISINGVDVSLHPAGHVLGSAQVRVEYRGEV
WVASGDYKLDPDPTCAPFEPVRCHTFITESTFGLPIYRWDAPQTVFDGIDSWWRHNAATN
RASVLFCYSFGKAQHILAGIDAGIGPIFCHGAVEPLNRAYRAAGVALPPVRLVSEIPAKS
KEVFRQALVIAPPSAQGSTWLRRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWP
GLQTAIAATGAQRVIVTHGQVEPMVRWLHEQGLEAGAFATEYGDDAIEADAAAGNEAAAP
EAS