Protein Info for QEN71_RS20255 in Paraburkholderia sabiae LMG 24235
Annotation: response regulator transcription factor
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 35% identical to REGX3_MYCS2: Sensory transduction protein regX3 (regX3) from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
KEGG orthology group: None (inferred from 93% identity to bph:Bphy_4665)Predicted SEED Role
"Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (241 amino acids)
>QEN71_RS20255 response regulator transcription factor (Paraburkholderia sabiae LMG 24235) MRIAILQRDPIQGKLLEKIIVQAGHSCALYDDGLTLSKVLARSTVDLLVLDWHALRLSGT DVLKAVRSVGGERMPVIFASADDSEESAVRAFVLGADDYVTLPARHAEFRERLCALLRRA YPERYGKDSFDVGPYHFDTRRQLVTLRGAPVQLSGTQYRLASLFFSNIGRVLSRDHIFAM VWGREFREVTRTIDSHVSRLRLLLQIEPHNDFRLQPVYKSGYRLLHLRTNEEVVVPHAEA A