Protein Info for QEN71_RS18355 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 96 to 121 (26 residues), see Phobius details amino acids 133 to 157 (25 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 235 to 260 (26 residues), see Phobius details amino acids 280 to 306 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 74 (74 residues), 24.4 bits, see alignment E=2.7e-09 PF00528: BPD_transp_1" amino acids 112 to 311 (200 residues), 125.2 bits, see alignment E=2.7e-40

Best Hits

Swiss-Prot: 50% identical to OPPB_ECOLI: Oligopeptide transport system permease protein OppB (oppB) from Escherichia coli (strain K12)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 98% identity to bph:Bphy_4504)

MetaCyc: 50% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppB (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>QEN71_RS18355 ABC transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MLAYTLRRTLWAIPTILAVITACYLLLHLTPGGPFDTEKQLSAATLANLNARYHLDEPLW
QQYLHYLWRLLHGDLGLSFRYTDWSVTDLVLKALPVSLGVGGVSVPIAVVIGVALGTIAA
VRRDSVIDHTVMVLGNVGNVVPPFVLGPLLVWVFAILLKTSDGHGWLPAGSWGDGEWRYR
VLPIALLTIINVALIARVMRGSMIEVLSGNFIRTARAKGLPARTIVLRHAMKPALMPVVS
LLGSVCISSITAAVVTESVFALPGLGQLVVNGAINRDYTLVLGLVVLTTAVAVLFNLLVD
LAYAWLDPRIRY