Protein Info for QEN71_RS18350 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 134 to 151 (18 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 233 to 237 (5 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details PF12911: OppC_N" amino acids 18 to 70 (53 residues), 44.8 bits, see alignment 9.1e-16 PF00528: BPD_transp_1" amino acids 113 to 294 (182 residues), 100.8 bits, see alignment E=8e-33

Best Hits

Swiss-Prot: 53% identical to OPPC_HAEIN: Oligopeptide transport system permease protein OppC (oppC) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 97% identity to bph:Bphy_4503)

MetaCyc: 55% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter inner membrane subunit OppC (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>QEN71_RS18350 ABC transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MGTPIINLTVTDAPPSRSPFATAARRFARNRAAFAALLLLVLIVLACFVGPLLSPNNAID
SDWSAISLAPTFANMHWFGTDELGRDLLVRTLVGGRVSLEVGLLGTLVSGVIGVAWGATA
GYLGGRVDAVMMRIVDMMYAIPYMLIAILMMTLFGRAFYLVVLTISAFSWLDMARVVRGQ
TLSLRSREFIDAAKAIGVGSRSIIARHIVPNLIGVVVVYATVTVPGIVLTESVLSFLGLG
VQEPMTSWGVLIQDGAQKLESTPWLLLCPALMLCATLYCVSFVGDGLRDAFDPKDR