Protein Info for QEN71_RS17830 in Paraburkholderia sabiae LMG 24235

Annotation: deoxyribodipyrimidine photo-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 PF00875: DNA_photolyase" amino acids 15 to 185 (171 residues), 152.2 bits, see alignment E=1.3e-48 PF03441: FAD_binding_7" amino acids 296 to 498 (203 residues), 297.4 bits, see alignment E=4.5e-93

Best Hits

KEGG orthology group: K01669, deoxyribodipyrimidine photo-lyase [EC: 4.1.99.3] (inferred from 90% identity to bph:Bphy_4409)

Predicted SEED Role

"Deoxyribodipyrimidine photolyase (EC 4.1.99.3)" (EC 4.1.99.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.1.99.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>QEN71_RS17830 deoxyribodipyrimidine photo-lyase (Paraburkholderia sabiae LMG 24235)
MTRAYQINEHFRNGLVWFRRDLRTGDNAALYYALKHCERVWCVFVFDTTILQPLIDSAHQ
HDAHSGKVQDRRIEFILASVEELDGSLKEGGGGLIVLHGDPVDAIPKLAAQLEVEAVFTN
HDYEPVAIERDETIADHLRDDGRQLLTFKDQVIFERDELLNGQRKPFAVFRPYKNAWLKQ
LTPFDLKPYPVERYAQSLARPPHKLDHAWPTLAKMGFAPGEMAETKLLAGMSGARTLLED
FTTRIDSYANRRDFPAARGTSHLSVHLRFGTVSIRTLARLAHEMSLQPDGQGAATWLSEL
IWRDFYFMILTHHPHIAKRESFKREFDTLRWETGKDADALFAAWCDGRTGYPLVDAAMLQ
LNQTGFMHNRLRMVTASFLAKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDA
QPWFRIFNPVTQSEKFDPQGLFIKRFLPELEKVPAKWIHAPWQADPDDLKDWGVVLGKDY
PQPVVDHAKARQQTLARYGVLRSR