Protein Info for QEN71_RS17020 in Paraburkholderia sabiae LMG 24235

Annotation: FAD-binding and (Fe-S)-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1003 transmembrane" amino acids 702 to 722 (21 residues), see Phobius details PF01565: FAD_binding_4" amino acids 57 to 193 (137 residues), 130.1 bits, see alignment E=1.2e-41 PF02913: FAD-oxidase_C" amino acids 284 to 533 (250 residues), 170.6 bits, see alignment E=1.3e-53 PF13183: Fer4_8" amino acids 593 to 670 (78 residues), 38.4 bits, see alignment 3.7e-13 PF13534: Fer4_17" amino acids 596 to 671 (76 residues), 31.3 bits, see alignment 5.9e-11 PF02754: CCG" amino acids 773 to 850 (78 residues), 15.9 bits, see alignment 3e-06

Best Hits

KEGG orthology group: K06911, (no description) (inferred from 92% identity to bph:Bphy_4256)

Predicted SEED Role

"Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD" in subsystem Glycolate, glyoxylate interconversions or Photorespiration (oxidative C2 cycle) (EC 1.1.99.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.14

Use Curated BLAST to search for 1.1.99.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1003 amino acids)

>QEN71_RS17020 FAD-binding and (Fe-S)-binding domain-containing protein (Paraburkholderia sabiae LMG 24235)
MSNSTLLVKPIHLVPSAARMSTPLANRLRKELRGDVLFDAASRGRYSTDASIYQITPIGV
VVPRDLDDLLMALDIARSENVPLLARGAGSSQCGQTVGEALVIDTSKWLNQVIEFDKDKR
TVTVEPGIVLDHLNAWLKPHGLWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMVHNVE
AIDAILADGTHAHFASLRDAPQGARLQQIVEGVKAIALRERDEIVAQVPKVLRRVAGYNI
DLFDCQNPRAYTDDGVANLAHLLVGSEGTLAFSRQLTLKLAPLPAHKTLGVVNFPTFWQA
MDLTQHIVKLKPVAVELVDRTMIDLAMSNPAFRPVIEKALVGRPEAILLVEFAGENRDEQ
LASLKQLTELMADLGLPDSVVQMPDAGEQKALWEVRKAGLNIMMSMKGDGKPVSFIEDCA
VPLEHLAEYTSRLTEVFHRNGTEGTWYAHASVGTLHVRPILDMRRDGATKMRAIAEEAAA
LVREYKGAYSGEHGDGLCRGEWVAWQYGPRINRAFSEIKTLFDPDNRMNPDKIVRPPKMD
DAHNFRFAPGYKASALTPALDWSIWNVERDPMTGVETPQGTGNDLAGGLAKAVEMCNNNG
HCRKFDAGTMCPSYRVTKDEQHVTRGRANTLRLALSGQLGDEGLASQDVKDTLDLCVSCK
GCKRDCPTGIDMAKFKIEARATWAQKHGLRLREKMIAFMPRYASVAASMPGVFAFAGNLP
WFKRAMGFAPQRSLPRFVKPFLGSGSVKAASSGAVGTQKEVLLFVDTFNNSIEPENARAA
QQVLEAAGYTVHFNTRAGERPLCCGRTFLAAGLVDEAKREARRMLDAFRPYIERGVPVVG
LEPSCLLSLRDEFLQYGFGEEAERLSKLAMLFEEFLVREHAAGRLTLELKSIDGADQALV
HGHCHQKAFDAFTPVQTVLKWIPGLKVSMVESSCCGMAGSFGYEAEHYEASMAMAELSLL
PAVRGIDDRTVVVADGTSCRHQIHDGAGVSAVHVAQVLAKALR