Protein Info for QEN71_RS16995 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details amino acids 346 to 368 (23 residues), see Phobius details amino acids 376 to 400 (25 residues), see Phobius details amino acids 412 to 432 (21 residues), see Phobius details PF07690: MFS_1" amino acids 34 to 397 (364 residues), 153.2 bits, see alignment E=9.4e-49 amino acids 259 to 435 (177 residues), 52.6 bits, see alignment E=3.4e-18

Best Hits

Swiss-Prot: 43% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 97% identity to bph:Bphy_4251)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>QEN71_RS16995 MFS transporter (Paraburkholderia sabiae LMG 24235)
MSTPGAVAADSRNDKLSATAEIIKKVTWRLMPLIMICYLFAFFDRINISFAKFQLQTDLG
FSDTAYGLGASLFVIGYVLFEVPSNMLLYKVGARKWIARIMISWGLATAAMVFVQNEWQF
YGLRFLIGAMEAGFAPGVLYYLTLWFPASYRGRITSLLFLASAFSGLVGAPLSGLVLGQM
DGVYGIRGWHWLFMLGGLPCVVLGILVLKVLKDRIEDAGWLSASEKTYLSSQIAQQAQPT
THGHSLLGAIRTPGFLTLGLIYFLIQIASYGLNFWAPHLIRSAGTQNPTIIGLLTAVPYI
CGAICMVVVGRLSDATGERRKFVSVLLVMAAIGFFAAGYFDKQTVMLVVALAVLGAGVIA
SIPAFWALPPKLVSGAGAAGGIALINTLGQLGGIVSPVMVGRVRDVTGSTTPALYVIGGL
SLVCALIILYGLPQSLRQKDHTGRVEV