Protein Info for QEN71_RS16625 in Paraburkholderia sabiae LMG 24235

Annotation: ankyrin repeat domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 PF13637: Ank_4" amino acids 22 to 71 (50 residues), 25.1 bits, see alignment E=4.5e-09 amino acids 55 to 104 (50 residues), 39.6 bits, see alignment E=1.2e-13 amino acids 92 to 137 (46 residues), 33 bits, see alignment E=1.4e-11 amino acids 118 to 169 (52 residues), 37.6 bits, see alignment E=5.2e-13 PF12796: Ank_2" amino acids 23 to 111 (89 residues), 58.2 bits, see alignment E=2.5e-19 amino acids 115 to 172 (58 residues), 39.5 bits, see alignment E=1.8e-13 PF13606: Ank_3" amino acids 51 to 78 (28 residues), 19.8 bits, see alignment 2.1e-07 amino acids 116 to 144 (29 residues), 30.8 bits, see alignment 4.9e-11 PF00023: Ank" amino acids 51 to 82 (32 residues), 29.6 bits, see alignment 1.5e-10 amino acids 83 to 110 (28 residues), 18.7 bits, see alignment 4.3e-07 amino acids 116 to 147 (32 residues), 39.1 bits, see alignment 1.4e-13 PF13857: Ank_5" amino acids 56 to 88 (33 residues), 34.1 bits, see alignment 6.8e-12 amino acids 103 to 154 (52 residues), 34.5 bits, see alignment E=5.3e-12

Best Hits

Swiss-Prot: 56% identical to Y3287_PSEAE: Putative ankyrin repeat protein PA3287 (PA3287) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K06867, (no description) (inferred from 98% identity to bph:Bphy_4177)

Predicted SEED Role

"FOG: Ankyrin repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>QEN71_RS16625 ankyrin repeat domain-containing protein (Paraburkholderia sabiae LMG 24235)
MTDDKRSPEDIDPDLLEVAREIFDAARRGEANMLAAVIEKGAPPNLRNEKGDSLVMLAAY
HGHADAVRVLLERGADPNLRNDNGQTPIAGAAFKGFKDVVQTLLAHGADVEGASPDGRTA
LMIAAMFNRTEMVELLLAHGADPHARDANGVSAADAASRMGAPDTAALLAKKAGA