Protein Info for QEN71_RS15800 in Paraburkholderia sabiae LMG 24235

Annotation: non-ribosomal peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3200 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 2791 to 2808 (18 residues), see Phobius details amino acids 2819 to 2841 (23 residues), see Phobius details PF00501: AMP-binding" amino acids 15 to 369 (355 residues), 219.3 bits, see alignment E=1.5e-68 amino acids 1078 to 1423 (346 residues), 266 bits, see alignment E=1e-82 amino acids 2593 to 2952 (360 residues), 306 bits, see alignment E=6.9e-95 TIGR01733: amino acid adenylation domain" amino acids 39 to 443 (405 residues), 363.3 bits, see alignment E=4.6e-112 amino acids 1099 to 1495 (397 residues), 382.5 bits, see alignment E=6.8e-118 amino acids 2619 to 3025 (407 residues), 442.5 bits, see alignment E=4e-136 PF13193: AMP-binding_C" amino acids 427 to 499 (73 residues), 30.1 bits, see alignment (E = 1.5e-10) amino acids 3009 to 3079 (71 residues), 31.4 bits, see alignment (E = 6e-11) PF00550: PP-binding" amino acids 528 to 591 (64 residues), 33.6 bits, see alignment (E = 7.5e-12) amino acids 1583 to 1642 (60 residues), 48.8 bits, see alignment (E = 1.4e-16) amino acids 3105 to 3171 (67 residues), 40.3 bits, see alignment (E = 6.4e-14) PF00668: Condensation" amino acids 622 to 1050 (429 residues), 289.5 bits, see alignment E=8.7e-90 amino acids 1668 to 2099 (432 residues), 206.4 bits, see alignment E=1.5e-64 amino acids 2133 to 2571 (439 residues), 277.7 bits, see alignment E=3.3e-86 TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1968 to 2123 (156 residues), 118.1 bits, see alignment 1e-37

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3200 amino acids)

>QEN71_RS15800 non-ribosomal peptide synthetase (Paraburkholderia sabiae LMG 24235)
MTTFLTALHLRLRELARSAPHAPALAAFSPLTVRMSRVELDARASRVAAALRAHGAGAEV
RVGVCIDRSCDLFVALLAVLKAGGVFVPLDPRHPAERLDWMTRDAGLRHGIVTRDASASL
RARFEHCIDVDAIDIEQPVEFEDALVHPRSAAYMIYTSGSTGTPKAVVVEHGPLAAHCDA
VIGAYPMTDADRVLHFASVNFDLAHEYWLAPLAAGASIAITAPGTVAPDDARALIHHERV
TIAAFPPAYLREFAQAARRHGVPDSLRVLAFGGEAMPGDVFGEIRQTFNNVRLINGYGPT
ETVISPMLWPLDPRAAYEDTSCASLPIGAPIGLRVARMTEAGSVDGALIEHGACGELLLG
GACLARGYHGRAAQTAERFIPDANGEPGSRVYRTGDLARLRTDGAYDYMGRIDDQVQIRG
VRVEPGEIAQSLRSHPDVRDAAVLVEHIAGRVQLTACVVVTEALEESALREHLTQRLPDA
WQPHRFALLDALPYTLNGKLDREALRARVASQVAQVSYREPQSSIERTLAAIWQAILGDG
PVGLDDRFHARGGDSIAIMRLQAAIRADLHVNLRLDSLFADLTLEALSALVDASEREAAV
QVLPLKAMARGDASAAYVDHRASFAQQRFWVLAQTRDAGDAYHIAAHWNIRGSIDAALLE
SALAQVIERHEAWRTTLHEDENGIVMQRVHARIAVPVERIDLRNLMLDARNERANELAGE
HATRPFDLQRGPLLRASLVTFADDEHRLMLTAHHAISDGWSSRCAFAELAETYAALSKGR
AASLPTLAAQYADFAQWQRHWLDGAERERQLAYWRDALKDAPAPLALPVDRTVPAERTLI
GKRASRRLDARLSAAVRELASGAHASTFIVLLAALHAWLHRLTAATDVIVAAPVANRQRE
ETANLLGLFINTVALRARVSPHVSFADLLSQVRDTTLGAYANQDIPFDQVIDAVKPPVRR
GEEWLRVKFAQQFVFDDPVALPDAVATLTPGPDNAARFDFALDFTDDARGIELVAAWATD
CIDDATAHAWLDSFIALLTDSVAHPASPLSLLACAGLLSNTLQGREKTFEFDNVIAAFTH
HANATPKQIAVTDSQRQLTFEALNEASSRAARALLEKGAGAEQAIALCIERSVDFVVALL
AVLKSGSMAVPLDPAAPRERLEASIRACGARCVIVASNALQVETEVLSLNALIEANSHDA
PVTITPDQAAYLIYTSGSTGTPKGVVVSHRALADYVQGMLDELKFAPDASMAMVSTVAAD
LGHTTLFGALCSGRTLHLLPKECAFDPDRFAVTMRERGVGVLKIVPSHLHALLEAQQPTA
VLPSHALVLGGEPLPWTLVERITGLRPACRVINHYGPTEATVGALTFDATASLSAANAST
GVPTGRPLPNARVIVLDVHGAPVPVGGIGELYLGGPGVARGYLHRAAATAERFVPDASGP
KGARMYRTGDRVRLRADGAIDYLGRLDDQVKIRGYRVEPGEISATLRAIEGVRQAETLAI
VEDGRARLASFVVMQGSRDEAMLRAELAARLPDYMVPATLTLCDAFPVTANGKIDRAKLR
ELALQPVVQLTSDAPLEGIERILADVWKEVLRAEHVGRDDNFFELGGDSILALQVIARSR
KRGVRFTPKQLFDKPTVAQLAQVAQTVAAAEPKAETRAAVVPANDARIALTPAQHRFFEL
DVPARHHWNQAVELHASERFDLDAFAHAFGAVLSHHDAFRLRFAADTASSWSARYADKPF
DALPLVAVEARDEHDALAQFDELQRTFDLTRGPLAGALVAMLPDGTPRVWIAIHHLIVDG
VSWRVLLEDLEAAYRAARERRPVRLAGEGMRASDWAQRLAADAAALFARELPYWTSMKQA
STALPFDNPHGTASNADACTVEWTIDATLTQTLLTDANAAWRTQTIDLLVATLAHTLGTS
VPADSLLIELEGHGREALFEEVDASRTIGWLTSHYPVALPVREWGTATLAAVKDALRAVP
HKGLGFGVLRYLANESTRAALAALPRPRVTFNYLGQFGDASNDRVLNARFGGAGCERDPA
GPMSNALAIHAHIDGTRRLKMHWVYSAAMFNAGTVEKLARRFETTLREIAAQCIERVSKR
GASATPSDFPLAQRAGLTQAMLERLELDLRTVDDIYPLSPMQQGILFHSLYAPDRTTYVN
QLVATLTSPDIARVTDAFNRIVPQHDILRTSFWHDAEVPLQIVHRQAKLPVVVLDWRGRA
AQAASFEQWLREDRAQGFDLSKAPLMRVTLIRLSDDEWRLVWTRHHLLLDGWSTARMFAD
VLRDYMSERRALSFGQATRLRYRDFIAWLDARDHEADKAFWLERLAHFDEPTLVAPNVSA
DNGDAAPSETWRARFDASTTAKLTALARNLKLTVNTLVQGAWALALQRMTHHATVAFGAT
VAGRPDALPDVDSVLGLFINTLPVIATPAPQRRIADWLADLQRDNAANAEHAHTPLFDIQ
RWAGQGGGAMFDTLVVFENYPVDPAWSANDELALRLSDLRSIESTDLAVTLVVQAGDTLT
IDYGYDTARLDEARVRALHRAFDACIEAFIADPHALLGNVSIATQDDLAQLASHNDTART
WPDELQLPLHRQFERHAAAMPDAIALDFIDAREVRTRVTYAELNERANRVAGALLNAGVS
ADSVVALCVERSIDMVVALFGVLKAGAAYLPVDPDYPAERIAYLLDDARPAVVLTQRALH
ARVVDSIGRADACVLCVEQLTSNPALESSIDVEPDQLAYLIYTSGSTGKPKGAGNTHRAL
ANRIAWMQGAYSLTPRDVVLHKTPFGFDVSVWEFVWPLSVGATLAIAAPGDHRDPARLAA
AIAAYGVTTLHFVPSMLGAFLGHLKDFDAAAQCESIVRVVASGEALSPELVARARLLLPQ
AQLHNLYGPTEAAIDVSHWTCTDDDAQAVAVPIGEPIANIQLHALDAALHPLPAGAIGEL
YLGGVGLARGYLGRAALTAERFVPDPFTPGARLYRTGDLVCRRADGVLDYLGRADQQVKL
RGLRIEPGEIEALLRAAPGVHDAVVIVRDEQLIGYVARRAEEAFDRSALFAALNAQLPAY
MVPAHLIELDALPVTPNGKCDRNALPTPSLQSTDEAEPQTDTERDLAAIWQRVLRIDGSH
AIGRDADFFALGGHSLLATQVNAQINLHWSLALPLRTLFDARTLARCAAAIDAALDARGV
HAIDDAARAIDALLGELEAQ