Protein Info for QEN71_RS14900 in Paraburkholderia sabiae LMG 24235

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details PF02077: SURF4" amino acids 7 to 134 (128 residues), 53 bits, see alignment E=6.1e-18 PF07291: MauE" amino acids 10 to 91 (82 residues), 27 bits, see alignment E=7.4e-10 PF07681: DoxX" amino acids 12 to 94 (83 residues), 75 bits, see alignment E=9.2e-25

Best Hits

Swiss-Prot: 57% identical to YPHA_SHIFL: Inner membrane protein YphA (yphA) from Shigella flexneri

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_3904)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>QEN71_RS14900 DoxX family protein (Paraburkholderia sabiae LMG 24235)
MNTFIEQRKDALLLVARVLLVVLFVLFGWSKLTGFAGTEQYMASTGAPVPALAAVIAIVM
ELIVGVVIAVGFKTRALALLLALYTLGTAFIGHHFWTQTGMEQYINMINFYKNISIIGGL
LLLFVTGPGKYSIDRA