Protein Info for QEN71_RS13440 in Paraburkholderia sabiae LMG 24235

Annotation: YbaK/EbsC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 PF04073: tRNA_edit" amino acids 43 to 164 (122 residues), 63 bits, see alignment E=1.4e-21

Best Hits

KEGG orthology group: None (inferred from 70% identity to bpy:Bphyt_4449)

Predicted SEED Role

"Uncharacterized protein PA2301"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>QEN71_RS13440 YbaK/EbsC family protein (Paraburkholderia sabiae LMG 24235)
MLSHEPLQKLDIIASDRIGAHLPAHVASSVEGRDIVVFAVTDDASDTADFSARYGFPMED
CANTIVVRYKKDGGEHLAAIVTLGSLRLDVNGAVKAVLGAKRISFAQREIATEQSAMEFG
GITAFGLPASWRVLVDAAVMERQQVVMGAGIRKAKLLLAPSVLAQLDTVEVAQLTLPPGE
PEAA